Dune::YaspGrid< dim, Coordinates > Class Template Reference

[ provides Dune::Grid ] More...

#include <dune/grid/yaspgrid.hh>

Public Types
typedef Coordinates::ctype	ctype
	Type used for coordinates.
typedef ReservedVector< YGridLevel, 32 >::const_iterator	YGridLevelIterator
	Iterator over the grid levels.
typedef YaspGridFamily< dim, Coordinates >	GridFamily
	the GridFamily of this grid

Public Member Functions
const Torus< Communication, dim > &	torus () const
	return reference to torus
int	globalSize (int i) const
	return number of cells on finest level in given direction on all processors
iTupel	globalSize () const
	return number of cells on finest level on all processors
int	levelSize (int l, int i) const
	return size of the grid (in cells) on level l in direction i
iTupel	levelSize (int l) const
	return size vector of the grid (in cells) on level l
bool	isPeriodic (int i) const
	return whether the grid is periodic in direction i
YGridLevelIterator	begin () const
	return iterator pointing to coarsest level
YGridLevelIterator	begin (int i) const
	return iterator pointing to given level
YGridLevelIterator	end () const
	return iterator pointing to one past the finest level
	YaspGrid (const Coordinates &coordinates, std::bitset< dim > periodic=std::bitset< dim >(0ULL), int overlap=1, Communication comm=Communication(), const Yasp::Partitioning< dim > *partitioner=defaultPartitioner())
template<class C = Coordinates, typename std::enable_if_t< std::is_same_v< C, EquidistantCoordinates< ctype, dim > >, int > = 0>
	YaspGrid (Dune::FieldVector< ctype, dim > L, std::array< int, std::size_t{dim}> s, std::bitset< std::size_t{dim}> periodic=std::bitset< std::size_t{dim}>{0ULL}, int overlap=1, Communication comm=Communication(), const Yasp::Partitioning< dim > *partitioner=defaultPartitioner())
template<class C = Coordinates, typename std::enable_if_t< std::is_same_v< C, EquidistantOffsetCoordinates< ctype, dim > >, int > = 0>
	YaspGrid (Dune::FieldVector< ctype, dim > lowerleft, Dune::FieldVector< ctype, dim > upperright, std::array< int, std::size_t{dim}> s, std::bitset< std::size_t{dim}> periodic=std::bitset< std::size_t{dim}>(0ULL), int overlap=1, Communication comm=Communication(), const Yasp::Partitioning< dim > *partitioner=defaultPartitioner())
template<class C = Coordinates, typename std::enable_if_t< std::is_same_v< C, TensorProductCoordinates< ctype, dim > >, int > = 0>
	YaspGrid (std::array< std::vector< ctype >, std::size_t{dim}> coords, std::bitset< std::size_t{dim}> periodic=std::bitset< std::size_t{dim}>(0ULL), int overlap=1, Communication comm=Communication(), const Yasp::Partitioning< dim > *partitioner=defaultPartitioner())
	Standard constructor for a tensorproduct YaspGrid. More...
int	maxLevel () const
void	globalRefine (int refCount)
	refine the grid refCount times.
void	refineOptions (bool keepPhysicalOverlap)
	set options for refinement More...
bool	mark (int refCount, const typename Traits::template Codim< 0 >::Entity &e)
	Marks an entity to be refined/coarsened in a subsequent adapt. More...
int	getMark (const typename Traits::template Codim< 0 >::Entity &e) const
	returns adaptation mark for given entity More...
bool	adapt ()
	map adapt to global refine
bool	preAdapt ()
	returns true, if the grid will be coarsened
void	postAdapt ()
	clean up some markers
template<int cd, PartitionIteratorType pitype>
Traits::template Codim< cd >::template Partition< pitype >::LevelIterator	lbegin (int level) const
	one past the end on this level
template<int cd, PartitionIteratorType pitype>
Traits::template Codim< cd >::template Partition< pitype >::LevelIterator	lend (int level) const
	Iterator to one past the last entity of given codim on level for partition type.
template<int cd>
Traits::template Codim< cd >::template Partition< All_Partition >::LevelIterator	lbegin (int level) const
	version without second template parameter for convenience
template<int cd>
Traits::template Codim< cd >::template Partition< All_Partition >::LevelIterator	lend (int level) const
	version without second template parameter for convenience
template<int cd, PartitionIteratorType pitype>
Traits::template Codim< cd >::template Partition< pitype >::LeafIterator	leafbegin () const
	return LeafIterator which points to the first entity in maxLevel
template<int cd, PartitionIteratorType pitype>
Traits::template Codim< cd >::template Partition< pitype >::LeafIterator	leafend () const
	return LeafIterator which points behind the last entity in maxLevel
template<int cd>
Traits::template Codim< cd >::template Partition< All_Partition >::LeafIterator	leafbegin () const
	return LeafIterator which points to the first entity in maxLevel
template<int cd>
Traits::template Codim< cd >::template Partition< All_Partition >::LeafIterator	leafend () const
	return LeafIterator which points behind the last entity in maxLevel
int	overlapSize (int level, int codim) const
	return size (= distance in graph) of overlap region
int	overlapSize (int odim) const
	return size (= distance in graph) of overlap region
int	ghostSize (int level, int codim) const
	return size (= distance in graph) of ghost region
int	ghostSize (int codim) const
	return size (= distance in graph) of ghost region
int	size (int level, int codim) const
	number of entities per level and codim in this process
int	size (int codim) const
	number of leaf entities per codim in this process
int	size (int level, GeometryType type) const
	number of entities per level and geometry type in this process
int	size (GeometryType type) const
	number of leaf entities per geometry type in this process
size_t	numBoundarySegments () const
	returns the number of boundary segments within the macro grid
const Dune::FieldVector< ctype, dim > &	domainSize () const
	returns the size of the physical domain
template<class DataHandleImp , class DataType >
void	communicate (CommDataHandleIF< DataHandleImp, DataType > &data, InterfaceType iftype, CommunicationDirection dir, int level) const
template<class DataHandleImp , class DataType >
void	communicate (CommDataHandleIF< DataHandleImp, DataType > &data, InterfaceType iftype, CommunicationDirection dir) const
template<class DataHandle , int codim>
void	communicateCodim (DataHandle &data, InterfaceType iftype, CommunicationDirection dir, int level) const
const Communication &	comm () const
	return a communication object
Traits::LevelGridView	levelGridView (int level) const
	View for a grid level for All_Partition.
Traits::LeafGridView	leafGridView () const
	View for the leaf grid for All_Partition.
bool	mark (int refCount, const typename Traits ::template Codim< 0 >::Entity &e)
	Marks an entity to be refined/coarsened in a subsequent adapt. More...
bool	loadBalance ()
	default implementation of load balance does nothing and returns false
bool	loadBalance (DataHandle &data)
	default implementation of load balance does nothing and returns false
Adaptivity and grid refinement
bool	mark (int refCount, const typename Codim< 0 >::Entity &e)
	Marks an entity to be refined/coarsened in a subsequent adapt. More...
int	getMark (const typename Codim< 0 >::Entity &e) const
	returns adaptation mark for given entity More...

Static Public Attributes
Exported constants
static constexpr int	dimension
	The dimension of the grid.
static constexpr int	dimensionworld
	The dimension of the world the grid lives in.

Protected Member Functions
void	makelevel (const Coordinates &coords, std::bitset< dim > periodic, iTupel o_interior, int overlap)
	Make a new YGridLevel structure. More...
void	intersections (const YGridComponent< Coordinates > &sendgrid, const YGridComponent< Coordinates > &recvgrid, std::deque< Intersection > &sendlist, std::deque< Intersection > &recvlist)
	Construct list of intersections with neighboring processors. More...

Exported types
typedef GridFamily::Traits::LeafGridView	LeafGridView
	type of view for leaf grid
typedef GridFamily::Traits::LevelGridView	LevelGridView
	type of view for level grid
typedef GridFamily::Traits::LeafIntersection	LeafIntersection
	A type that is a model of Dune::Intersection, an intersections of two codimension 1 of two codimension 0 entities in the leaf view.
typedef GridFamily::Traits::LevelIntersection	LevelIntersection
	A type that is a model of Dune::Intersection, an intersections of two codimension 1 of two codimension 0 entities in a level view.
typedef GridFamily::Traits::LeafIntersectionIterator	LeafIntersectionIterator
	A type that is a model of Dune::IntersectionIterator which is an iterator that allows to examine, but not to modify, the intersections of codimension 1 of an leaf element (entity of codimension 0) with other leaf elements.
typedef GridFamily::Traits::LevelIntersectionIterator	LevelIntersectionIterator
	A type that is a model of Dune::IntersectionIterator which is an iterator that allows to examine, but not to modify, the intersections of codimension 1 of an element (entity of codimension 0) with other elements on the same level.
typedef GridFamily::Traits::HierarchicIterator	HierarchicIterator
	A type that is a model of Dune::HierarchicIterator A type of iterator that allows to examine, but not to modify, entities of codimension 0 that result from refinement of an entity of codimension 0.
typedef GridFamily::Traits::LevelIndexSet	LevelIndexSet
	A type that is a model of Dune::IndexSet which provides a consecutive, but non persistent, numbering for entities on a grid level.
typedef GridFamily::Traits::LeafIndexSet	LeafIndexSet
	A type that is a model of Dune::IndexSet which provides a consecutive, but non persistent, numbering for entities in the leaf grid.
typedef GridFamily::Traits::GlobalIdSet	GlobalIdSet
	A type that is a model of Dune::IdSet which provides a unique and persistent numbering for all entities in the grid. The numbering is unique over all processes over which the grid is partitioned. The numbering is not necessarily consecutive.
typedef GridFamily::Traits::LocalIdSet	LocalIdSet
	A type that is a model of Dune::IdSet which provides a unique and persistent numbering for all entities in the grid. The numbering is only unique in a single process and it is not necessarily consecutive.
using	CollectiveCommunication = Communication
using	Communication_t = typename T::Communication
using	DeprecatedCollectiveCommunication_t = typename T::CollectiveCommunication

Parallel data distribution and communication
Codim< EntitySeed::codimension >::Entity	entity (const EntitySeed &seed) const
	obtain Entity from EntitySeed.
GridImp &	asImp ()
	Barton-Nackman trick.
const GridImp &	asImp () const
	Barton-Nackman trick.

Detailed Description

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>
class Dune::YaspGrid< dim, Coordinates >

[ provides Dune::Grid ]

Provides a distributed structured cube mesh.

YaspGrid stands for yet another structured parallel grid. It implements the dune grid interface for structured grids with arbitrary overlap (including zero), periodic boundaries, and a fast implementation allowing on-the-fly computations.

YaspGrid supports three coordinate modes: EquidistantCoordinates, EquidistantOffsetCoordinates, and Dune::TensorProductCoordinates.

Template Parameters

dim	The dimension of the grid and its surrounding world
Coordinates	The coordinate mode of the grid.

Examples

recipe-integration.cc, and recipe-iterate-over-grid.cc.

Member Typedef Documentation

CollectiveCommunication

using Dune::Grid< dim, dimworld, Coordinates::ctype , YaspGridFamily< dim, EquidistantCoordinates< double, dim > > >::CollectiveCommunication = Communication

inherited

Deprecated:

Use Communication instead! Will be removed at some point in the future.

Constructor & Destructor Documentation

YaspGrid() [1/4]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

Dune::YaspGrid< dim, Coordinates >::YaspGrid ( const Coordinates &  coordinates, std::bitset< dim >  periodic = std::bitset<dim>(0ULL), int  overlap = 1, Communication  comm = Communication(), const Yasp::Partitioning< dim > *  partitioner = defaultPartitioner()  )

inline

Standard constructor for a YaspGrid with a given Coordinates object

Parameters

coordinates	Object that stores or computes the vertex coordinates
periodic	tells if direction is periodic or not
overlap	size of overlap on coarsest grid (same in all directions)
comm	the communication object for this grid. An MPI communicator can be given here.
partitioner	pointer to an overloaded Yasp::Partitioning instance

References Dune::YaspGrid< dim, Coordinates >::begin(), Dune::YaspGrid< dim, Coordinates >::comm(), DUNE_THROW, Dune::YaspGrid< dim, Coordinates >::end(), Dune::YaspGrid< dim, Coordinates >::makelevel(), Dune::Torus< Communication, d >::partition(), Dune::Torus< Communication, d >::rank(), and Dune::ReservedVector< T, n >::resize().

YaspGrid() [2/4]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

template<class C = Coordinates, typename std::enable_if_t< std::is_same_v< C, EquidistantCoordinates< ctype, dim > >, int > = 0>

Dune::YaspGrid< dim, Coordinates >::YaspGrid ( Dune::FieldVector< ctype, dim >  L, std::array< int, std::size_t{dim}>  s, std::bitset< std::size_t{dim}>  periodic = std::bitset<std::size_t{dim}>{0ULL}, int  overlap = 1, Communication  comm = Communication(), const Yasp::Partitioning< dim > *  partitioner = defaultPartitioner()  )

inline

Standard constructor for an equidistant YaspGrid

Parameters

L	extension of the domain
s	number of cells on coarse mesh in each direction
periodic	tells if direction is periodic or not
overlap	size of overlap on coarsest grid (same in all directions)
comm	the communication object for this grid. An MPI communicator can be given here.
partitioner	pointer to an overloaded Yasp::Partitioning instance

YaspGrid() [3/4]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

template<class C = Coordinates, typename std::enable_if_t< std::is_same_v< C, EquidistantOffsetCoordinates< ctype, dim > >, int > = 0>

Dune::YaspGrid< dim, Coordinates >::YaspGrid ( Dune::FieldVector< ctype, dim >  lowerleft, Dune::FieldVector< ctype, dim >  upperright, std::array< int, std::size_t{dim}>  s, std::bitset< std::size_t{dim}>  periodic = std::bitset<std::size_t{dim}>(0ULL), int  overlap = 1, Communication  comm = Communication(), const Yasp::Partitioning< dim > *  partitioner = defaultPartitioner()  )

inline

Constructor for an equidistant YaspGrid with non-trivial origin

Parameters

lowerleft	Lower left corner of the domain
upperright	Upper right corner of the domain
s	number of cells on coarse mesh in each direction
periodic	tells if direction is periodic or not
overlap	size of overlap on coarsest grid (same in all directions)
comm	the communication object for this grid. An MPI communicator can be given here.
partitioner	pointer to an overloaded Yasp::Partitioning instance

YaspGrid() [4/4]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

template<class C = Coordinates, typename std::enable_if_t< std::is_same_v< C, TensorProductCoordinates< ctype, dim > >, int > = 0>

Dune::YaspGrid< dim, Coordinates >::YaspGrid ( std::array< std::vector< ctype >, std::size_t{dim}>  coords, std::bitset< std::size_t{dim}>  periodic = std::bitset<std::size_t{dim}>(0ULL), int  overlap = 1, Communication  comm = Communication(), const Yasp::Partitioning< dim > *  partitioner = defaultPartitioner()  )

inline

Standard constructor for a tensorproduct YaspGrid.

Parameters

coords	coordinate vectors to be used for coarse grid
periodic	tells if direction is periodic or not
overlap	size of overlap on coarsest grid (same in all directions)
comm	the communication object for this grid. An MPI communicator can be given here.
partitioner	pointer to an overloaded Yasp::Partitioning instance

Member Function Documentation

communicate() [1/2]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

template<class DataHandleImp , class DataType >

void Dune::YaspGrid< dim, Coordinates >::communicate ( CommDataHandleIF< DataHandleImp, DataType > &  data, InterfaceType  iftype, CommunicationDirection  dir  ) const

inline

The new communication interface

communicate objects for all codims on the leaf grid

References Dune::YaspGrid< dim, Coordinates >::maxLevel().

communicate() [2/2]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

template<class DataHandleImp , class DataType >

void Dune::YaspGrid< dim, Coordinates >::communicate ( CommDataHandleIF< DataHandleImp, DataType > &  data, InterfaceType  iftype, CommunicationDirection  dir, int  level  ) const

inline

The new communication interface

communicate objects for all codims on a given level

communicateCodim()

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

template<class DataHandle , int codim>

void Dune::YaspGrid< dim, Coordinates >::communicateCodim ( DataHandle &  data, InterfaceType  iftype, CommunicationDirection  dir, int  level  ) const

inline

The new communication interface

communicate objects for one codim

References Dune::All_All_Interface, Dune::BackwardCommunication, Dune::YaspGrid< dim, Coordinates >::begin(), Dune::YGridList< Coordinates >::begin(), Dune::YGridList< Coordinates >::end(), Dune::Torus< Communication, d >::exchange(), Dune::InteriorBorder_All_Interface, Dune::InteriorBorder_InteriorBorder_Interface, Dune::Overlap_All_Interface, Dune::Overlap_OverlapFront_Interface, Dune::Torus< Communication, d >::recv(), Dune::Torus< Communication, d >::send(), Dune::YGridList< Coordinates >::size(), and Dune::YaspGrid< dim, Coordinates >::torus().

getMark() [1/2]

int Dune::Grid< dim, dimworld, Coordinates::ctype , YaspGridFamily< dim, EquidistantCoordinates< double, dim > > >::getMark ( const typename Codim< 0 >::Entity &  e ) const

inlineinherited

returns adaptation mark for given entity

Parameters

[in]

e

Entity for which adaptation mark should be determined

Returns

int adaptation mark currently set for given Entity e

getMark() [2/2]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

int Dune::YaspGrid< dim, Coordinates >::getMark ( const typename Traits::template Codim< 0 >::Entity &  e ) const

inline

returns adaptation mark for given entity

Parameters

[in]

e

Entity for which adaptation mark should be determined

Returns

int adaptation mark, here the default value 0 is returned

References Dune::YaspGrid< dim, Coordinates >::maxLevel().

intersections()

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

void Dune::YaspGrid< dim, Coordinates >::intersections ( const YGridComponent< Coordinates > &  sendgrid, const YGridComponent< Coordinates > &  recvgrid, std::deque< Intersection > &  sendlist, std::deque< Intersection > &  recvlist  )

inlineprotected

Construct list of intersections with neighboring processors.

Parameters

recvgrid	the grid stored in this processor
sendgrid	the subgrid to be sent to neighboring processors
sendlist	the deque to fill with send intersections
recvlist	the deque to fill with recv intersections

Returns

two lists: Intersections to be sent and Intersections to be received

References Dune::Torus< Communication, d >::coord(), Dune::Torus< Communication, d >::dims(), Dune::Torus< Communication, d >::exchange(), Dune::YaspGrid< dim, Coordinates >::globalSize(), Dune::YGridComponent< Coordinates >::intersection(), Dune::YGridComponent< Coordinates >::move(), Dune::Torus< Communication, d >::neighbors(), Dune::Torus< Communication, d >::recv(), Dune::Torus< Communication, d >::recvbegin(), Dune::Torus< Communication, d >::recvend(), Dune::Torus< Communication, d >::send(), Dune::Torus< Communication, d >::sendbegin(), Dune::Torus< Communication, d >::sendend(), and Dune::YaspGrid< dim, Coordinates >::size().

Referenced by Dune::YaspGrid< dim, Coordinates >::makelevel().

makelevel()

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

void Dune::YaspGrid< dim, Coordinates >::makelevel ( const Coordinates &  coords, std::bitset< dim >  periodic, iTupel  o_interior, int  overlap  )

inlineprotected

Make a new YGridLevel structure.

Parameters

coords	the coordinate container
periodic	indicate periodicity for each direction
o_interior	origin of interior (non-overlapping) cell decomposition
overlap	to be used on this grid level

References Dune::ReservedVector< T, n >::back(), Dune::YaspGrid< dim, Coordinates >::globalSize(), Dune::YaspGrid< dim, Coordinates >::intersections(), Dune::YaspGrid< dim, Coordinates >::maxLevel(), Dune::power(), and Dune::YaspGrid< dim, Coordinates >::size().

Referenced by Dune::YaspGrid< dim, Coordinates >::globalRefine(), and Dune::YaspGrid< dim, Coordinates >::YaspGrid().

mark() [1/3]

bool Dune::Grid< dim, dimworld, Coordinates::ctype , YaspGridFamily< dim, EquidistantCoordinates< double, dim > > >::mark ( int  refCount, const typename Codim< 0 >::Entity &  e  )

inlineinherited

Marks an entity to be refined/coarsened in a subsequent adapt.

Parameters

[in]	refCount	Number of subdivisions that should be applied. Negative value means coarsening.
[in]	e	Entity that should be marked

Returns

true if Entity was marked, false otherwise.

mark() [2/3]

bool Dune::GridDefaultImplementation< dim, dimworld, Coordinates::ctype , YaspGridFamily< dim, EquidistantCoordinates< double, dim > > >::mark ( int  refCount, const typename Traits ::template Codim< 0 >::Entity &  e  )

inlineinherited

Marks an entity to be refined/coarsened in a subsequent adapt.

Parameters

[in]	refCount	Number of subdivisions that should be applied. Negative value means coarsening.
[in]	e	Entity to Entity that should be refined

Returns

true if Entity was marked, false otherwise.

Note

• default implementation is: return false; for grids with no adaptation.
• for the grid programmer: this method is implemented as a template method, because the Entity type is not defined when the class is instantiated You won't need this trick in the implementation. In your implementation you should use it as

  bool mark( int refCount,
             typename Traits::template Codim<0>::Entity & e ).

  This template method will vanish due to the inheritance rules.

mark() [3/3]

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

bool Dune::YaspGrid< dim, Coordinates >::mark ( int  refCount, const typename Traits::template Codim< 0 >::Entity &  e  )

inline

Marks an entity to be refined/coarsened in a subsequent adapt.

Parameters

[in]	refCount	Number of subdivisions that should be applied. Negative value means coarsening.
[in]	e	Entity to Entity that should be refined

Returns

true if Entity was marked, false otherwise.

Note

• On yaspgrid marking one element will mark all other elements of the level as well
• If refCount is lower than refCount of a previous mark-call, nothing is changed

References Dune::Simd::Overloads::max(), and Dune::YaspGrid< dim, Coordinates >::maxLevel().

maxLevel()

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

int Dune::YaspGrid< dim, Coordinates >::maxLevel ( ) const

inline

Return maximum level defined in this grid. Levels are numbered 0 ... maxlevel with 0 the coarsest level.

References Dune::ReservedVector< T, n >::size().

Referenced by Dune::BackupRestoreFacility< Dune::YaspGrid< dim, Coordinates > >::backup(), Dune::BackupRestoreFacility< YaspGrid< dim, TensorProductCoordinates< ctype, dim > > >::backup(), Dune::YaspGrid< dim, Coordinates >::begin(), Dune::YaspGrid< dim, Coordinates >::communicate(), Dune::YaspGrid< dim, Coordinates >::getMark(), Dune::YaspGrid< dim, Coordinates >::globalRefine(), Dune::YaspGrid< dim, Coordinates >::globalSize(), Dune::YaspGrid< dim, Coordinates >::leafbegin(), Dune::YaspGrid< dim, Coordinates >::leafend(), Dune::YaspGrid< dim, Coordinates >::makelevel(), Dune::YaspGrid< dim, Coordinates >::mark(), Dune::operator<<(), Dune::YaspGrid< dim, Coordinates >::overlapSize(), and Dune::YaspGrid< dim, Coordinates >::size().

refineOptions()

template<int dim, class Coordinates = EquidistantCoordinates<double, dim>>

void Dune::YaspGrid< dim, Coordinates >::refineOptions ( bool  keepPhysicalOverlap )

inline

set options for refinement

Parameters

keepPhysicalOverlap

[true] keep the physical size of the overlap, [false] keep the number of cells in the overlap. Default is [true].

Referenced by Dune::BackupRestoreFacility< Dune::YaspGrid< dim, Coordinates > >::restore().

---

The documentation for this class was generated from the following file:

• dune/grid/yaspgrid.hh