Dune Core Modules (2.9.0)

matrixhierarchy.hh
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1 // SPDX-FileCopyrightText: Copyright (C) DUNE Project contributors, see file LICENSE.md in module root
2 // SPDX-License-Identifier: LicenseRef-GPL-2.0-only-with-DUNE-exception
3 // -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 2 -*-
4 // vi: set et ts=4 sw=2 sts=2:
5 #ifndef DUNE_AMG_MATRIXHIERARCHY_HH
6 #define DUNE_AMG_MATRIXHIERARCHY_HH
7 
8 #include <algorithm>
9 #include <tuple>
10 #include "aggregates.hh"
11 #include "graph.hh"
12 #include "galerkin.hh"
13 #include "renumberer.hh"
14 #include "graphcreator.hh"
15 #include "hierarchy.hh"
16 #include <dune/istl/bvector.hh>
18 #include <dune/istl/matrixutils.hh>
21 #include <dune/istl/paamg/graph.hh>
27 
28 namespace Dune
29 {
30  namespace Amg
31  {
42  enum {
50  MAX_PROCESSES = 72000
51  };
52 
59  template<class M, class PI, class A=std::allocator<M> >
61  {
62  public:
64  typedef M MatrixOperator;
65 
67  typedef typename MatrixOperator::matrix_type Matrix;
68 
70  typedef PI ParallelInformation;
71 
73  typedef A Allocator;
74 
77 
80 
83 
85  using AAllocator = typename std::allocator_traits<Allocator>::template rebind_alloc<AggregatesMap*>;
86 
88  typedef std::list<AggregatesMap*,AAllocator> AggregatesMapList;
89 
91  typedef RedistributeInformation<ParallelInformation> RedistributeInfoType;
92 
94  using RILAllocator = typename std::allocator_traits<Allocator>::template rebind_alloc<RedistributeInfoType>;
95 
97  typedef std::list<RedistributeInfoType,RILAllocator> RedistributeInfoList;
98 
104  MatrixHierarchy(std::shared_ptr<MatrixOperator> fineMatrix,
105  std::shared_ptr<ParallelInformation> pinfo = std::make_shared<ParallelInformation>());
106 
107  ~MatrixHierarchy();
108 
114  template<typename O, typename T>
115  void build(const T& criterion);
116 
124  template<class F>
125  void recalculateGalerkin(const F& copyFlags);
126 
131  template<class V, class BA, class TA>
132  void coarsenVector(Hierarchy<BlockVector<V,BA>, TA>& hierarchy) const;
133 
139  template<class S, class TA>
140  void coarsenSmoother(Hierarchy<S,TA>& smoothers,
141  const typename SmootherTraits<S>::Arguments& args) const;
142 
147  std::size_t levels() const;
148 
153  std::size_t maxlevels() const;
154 
155  bool hasCoarsest() const;
156 
161  bool isBuilt() const;
162 
167  const ParallelMatrixHierarchy& matrices() const;
168 
174 
179  const AggregatesMapList& aggregatesMaps() const;
180 
187 
188  double getProlongationDampingFactor() const
189  {
190  return prolongDamp_;
191  }
192 
203  void getCoarsestAggregatesOnFinest(std::vector<std::size_t>& data) const;
204 
205  private:
206  typedef typename ConstructionTraits<MatrixOperator>::Arguments MatrixArgs;
207  typedef typename ConstructionTraits<ParallelInformation>::Arguments CommunicationArgs;
209  AggregatesMapList aggregatesMaps_;
211  RedistributeInfoList redistributes_;
213  ParallelMatrixHierarchy matrices_;
215  ParallelInformationHierarchy parallelInformation_;
216 
218  bool built_;
219 
221  int maxlevels_;
222 
223  double prolongDamp_;
224 
228  template<class Matrix, bool print>
229  struct MatrixStats
230  {
231 
235  static void stats([[maybe_unused]] const Matrix& matrix)
236  {}
237  };
238 
239  template<class Matrix>
240  struct MatrixStats<Matrix,true>
241  {
242  struct calc
243  {
244  typedef typename Matrix::size_type size_type;
245  typedef typename Matrix::row_type matrix_row;
246 
247  calc()
248  {
250  max=0;
251  sum=0;
252  }
253 
254  void operator()(const matrix_row& row)
255  {
256  min=std::min(min, row.size());
257  max=std::max(max, row.size());
258  sum += row.size();
259  }
260 
261  size_type min;
262  size_type max;
263  size_type sum;
264  };
268  static void stats(const Matrix& matrix)
269  {
270  calc c= for_each(matrix.begin(), matrix.end(), calc());
271  dinfo<<"Matrix row: min="<<c.min<<" max="<<c.max
272  <<" average="<<static_cast<double>(c.sum)/matrix.N()
273  <<std::endl;
274  }
275  };
276  };
277 
281  template<class T>
282  class CoarsenCriterion : public T
283  {
284  public:
290 
301  CoarsenCriterion(int maxLevel=100, int coarsenTarget=1000, double minCoarsenRate=1.2,
302  double prolongDamp=1.6, AccumulationMode accumulate=successiveAccu)
303  : AggregationCriterion(Dune::Amg::Parameters(maxLevel, coarsenTarget, minCoarsenRate, prolongDamp, accumulate))
304  {}
305 
307  : AggregationCriterion(parms)
308  {}
309 
310  };
311 
312  template<typename M, typename C1>
313  bool repartitionAndDistributeMatrix([[maybe_unused]] const M& origMatrix,
314  [[maybe_unused]] std::shared_ptr<M> newMatrix,
315  [[maybe_unused]] SequentialInformation& origComm,
316  [[maybe_unused]] std::shared_ptr<SequentialInformation>& newComm,
317  [[maybe_unused]] RedistributeInformation<SequentialInformation>& ri,
318  [[maybe_unused]] int nparts,
319  [[maybe_unused]] C1& criterion)
320  {
321  DUNE_THROW(NotImplemented, "Redistribution does not make sense in sequential code!");
322  }
323 
324 
325  template<typename M, typename C, typename C1>
326  bool repartitionAndDistributeMatrix(const M& origMatrix,
327  std::shared_ptr<M> newMatrix,
328  C& origComm,
329  std::shared_ptr<C>& newComm,
330  RedistributeInformation<C>& ri,
331  int nparts, C1& criterion)
332  {
333  Timer time;
334 #ifdef AMG_REPART_ON_COMM_GRAPH
335  // Done not repartition the matrix graph, but a graph of the communication scheme.
336  bool existentOnRedist=Dune::commGraphRepartition(origMatrix, origComm, nparts, newComm,
337  ri.getInterface(),
338  criterion.debugLevel()>1);
339 
340 #else
341  typedef Dune::Amg::MatrixGraph<const M> MatrixGraph;
342  typedef Dune::Amg::PropertiesGraph<MatrixGraph,
343  VertexProperties,
344  EdgeProperties,
345  IdentityMap,
346  IdentityMap> PropertiesGraph;
347  MatrixGraph graph(origMatrix);
348  PropertiesGraph pgraph(graph);
349  buildDependency(pgraph, origMatrix, criterion, false);
350 
351 #ifdef DEBUG_REPART
352  if(origComm.communicator().rank()==0)
353  std::cout<<"Original matrix"<<std::endl;
354  origComm.communicator().barrier();
355  printGlobalSparseMatrix(origMatrix, origComm, std::cout);
356 #endif
357  bool existentOnRedist=Dune::graphRepartition(pgraph, origComm, nparts,
358  newComm, ri.getInterface(),
359  criterion.debugLevel()>1);
360 #endif // if else AMG_REPART
361 
362  if(origComm.communicator().rank()==0 && criterion.debugLevel()>1)
363  std::cout<<"Repartitioning took "<<time.elapsed()<<" seconds."<<std::endl;
364 
365  ri.setSetup();
366 
367 #ifdef DEBUG_REPART
368  ri.checkInterface(origComm.indexSet(), newComm->indexSet(), origComm.communicator());
369 #endif
370 
371  redistributeMatrix(const_cast<M&>(origMatrix), *newMatrix, origComm, *newComm, ri);
372 
373 #ifdef DEBUG_REPART
374  if(origComm.communicator().rank()==0)
375  std::cout<<"Original matrix"<<std::endl;
376  origComm.communicator().barrier();
377  if(newComm->communicator().size()>0)
378  printGlobalSparseMatrix(*newMatrix, *newComm, std::cout);
379  origComm.communicator().barrier();
380 #endif
381 
382  if(origComm.communicator().rank()==0 && criterion.debugLevel()>1)
383  std::cout<<"Redistributing matrix took "<<time.elapsed()<<" seconds."<<std::endl;
384  return existentOnRedist;
385 
386  }
387 
388  template<class M, class IS, class A>
389  MatrixHierarchy<M,IS,A>::MatrixHierarchy(std::shared_ptr<MatrixOperator> fineMatrix,
390  std::shared_ptr<ParallelInformation> pinfo)
391  : matrices_(fineMatrix),
392  parallelInformation_(pinfo)
393  {
394  if (SolverCategory::category(*fineMatrix) != SolverCategory::category(*pinfo))
395  DUNE_THROW(ISTLError, "MatrixOperator and ParallelInformation must belong to the same category!");
396  }
397 
398  template<class M, class IS, class A>
399  template<typename O, typename T>
400  void MatrixHierarchy<M,IS,A>::build(const T& criterion)
401  {
402  prolongDamp_ = criterion.getProlongationDampingFactor();
403  typedef O OverlapFlags;
404  typedef typename ParallelMatrixHierarchy::Iterator MatIterator;
405  typedef typename ParallelInformationHierarchy::Iterator PInfoIterator;
406 
407  static const int noints=(Dune::Amg::MAX_PROCESSES/4096>0) ? (Dune::Amg::MAX_PROCESSES/4096) : 1;
408 
409  typedef bigunsignedint<sizeof(int)*8*noints> BIGINT;
410  GalerkinProduct<ParallelInformation> productBuilder;
411  MatIterator mlevel = matrices_.finest();
412  MatrixStats<typename M::matrix_type,MINIMAL_DEBUG_LEVEL<=INFO_DEBUG_LEVEL>::stats(mlevel->getmat());
413 
414  PInfoIterator infoLevel = parallelInformation_.finest();
415  BIGINT finenonzeros=countNonZeros(mlevel->getmat());
416  finenonzeros = infoLevel->communicator().sum(finenonzeros);
417  BIGINT allnonzeros = finenonzeros;
418 
419 
420  int level = 0;
421  int rank = 0;
422 
423  BIGINT unknowns = mlevel->getmat().N();
424 
425  unknowns = infoLevel->communicator().sum(unknowns);
426  double dunknowns=unknowns.todouble();
427  infoLevel->buildGlobalLookup(mlevel->getmat().N());
428  redistributes_.push_back(RedistributeInfoType());
429 
430  for(; level < criterion.maxLevel(); ++level, ++mlevel) {
431  assert(matrices_.levels()==redistributes_.size());
432  rank = infoLevel->communicator().rank();
433  if(rank==0 && criterion.debugLevel()>1)
434  std::cout<<"Level "<<level<<" has "<<dunknowns<<" unknowns, "<<dunknowns/infoLevel->communicator().size()
435  <<" unknowns per proc (procs="<<infoLevel->communicator().size()<<")"<<std::endl;
436 
437  MatrixOperator* matrix=&(*mlevel);
438  ParallelInformation* info =&(*infoLevel);
439 
440  if((
441 #if HAVE_PARMETIS
442  criterion.accumulate()==successiveAccu
443 #else
444  false
445 #endif
446  || (criterion.accumulate()==atOnceAccu
447  && dunknowns < 30*infoLevel->communicator().size()))
448  && infoLevel->communicator().size()>1 &&
449  dunknowns/infoLevel->communicator().size() <= criterion.coarsenTarget())
450  {
451  // accumulate to fewer processors
452  std::shared_ptr<Matrix> redistMat = std::make_shared<Matrix>();
453  std::shared_ptr<ParallelInformation> redistComm;
454  std::size_t nodomains = (std::size_t)std::ceil(dunknowns/(criterion.minAggregateSize()
455  *criterion.coarsenTarget()));
456  if( nodomains<=criterion.minAggregateSize()/2 ||
457  dunknowns <= criterion.coarsenTarget() )
458  nodomains=1;
459 
460  bool existentOnNextLevel =
461  repartitionAndDistributeMatrix(mlevel->getmat(), redistMat, *infoLevel,
462  redistComm, redistributes_.back(), nodomains,
463  criterion);
464  BIGINT unknownsRedist = redistMat->N();
465  unknownsRedist = infoLevel->communicator().sum(unknownsRedist);
466  dunknowns= unknownsRedist.todouble();
467  if(redistComm->communicator().rank()==0 && criterion.debugLevel()>1)
468  std::cout<<"Level "<<level<<" (redistributed) has "<<dunknowns<<" unknowns, "<<dunknowns/redistComm->communicator().size()
469  <<" unknowns per proc (procs="<<redistComm->communicator().size()<<")"<<std::endl;
470  MatrixArgs args(redistMat, *redistComm);
471  mlevel.addRedistributed(ConstructionTraits<MatrixOperator>::construct(args));
472  assert(mlevel.isRedistributed());
473  infoLevel.addRedistributed(redistComm);
474  infoLevel->freeGlobalLookup();
475 
476  if(!existentOnNextLevel)
477  // We do not hold any data on the redistributed partitioning
478  break;
479 
480  // Work on the redistributed Matrix from now on
481  matrix = &(mlevel.getRedistributed());
482  info = &(infoLevel.getRedistributed());
483  info->buildGlobalLookup(matrix->getmat().N());
484  }
485 
486  rank = info->communicator().rank();
487  if(dunknowns <= criterion.coarsenTarget())
488  // No further coarsening needed
489  break;
490 
491  typedef PropertiesGraphCreator<MatrixOperator,ParallelInformation> GraphCreator;
492  typedef typename GraphCreator::PropertiesGraph PropertiesGraph;
493  typedef typename GraphCreator::GraphTuple GraphTuple;
494 
495  typedef typename PropertiesGraph::VertexDescriptor Vertex;
496 
497  std::vector<bool> excluded(matrix->getmat().N(), false);
498 
499  GraphTuple graphs = GraphCreator::create(*matrix, excluded, *info, OverlapFlags());
500 
501  AggregatesMap* aggregatesMap=new AggregatesMap(std::get<1>(graphs)->maxVertex()+1);
502 
503  aggregatesMaps_.push_back(aggregatesMap);
504 
505  Timer watch;
506  watch.reset();
507  auto [noAggregates, isoAggregates, oneAggregates, skippedAggregates] =
508  aggregatesMap->buildAggregates(matrix->getmat(), *(std::get<1>(graphs)), criterion, level==0);
509 
510  if(rank==0 && criterion.debugLevel()>2)
511  std::cout<<" Have built "<<noAggregates<<" aggregates totally ("<<isoAggregates<<" isolated aggregates, "<<
512  oneAggregates<<" aggregates of one vertex, and skipped "<<
513  skippedAggregates<<" aggregates)."<<std::endl;
514 #ifdef TEST_AGGLO
515  {
516  // calculate size of local matrix in the distributed direction
517  int start, end, overlapStart, overlapEnd;
518  int procs=info->communicator().rank();
519  int n = UNKNOWNS/procs; // number of unknowns per process
520  int bigger = UNKNOWNS%procs; // number of process with n+1 unknows
521 
522  // Compute owner region
523  if(rank<bigger) {
524  start = rank*(n+1);
525  end = (rank+1)*(n+1);
526  }else{
527  start = bigger + rank * n;
528  end = bigger + (rank + 1) * n;
529  }
530 
531  // Compute overlap region
532  if(start>0)
533  overlapStart = start - 1;
534  else
535  overlapStart = start;
536 
537  if(end<UNKNOWNS)
538  overlapEnd = end + 1;
539  else
540  overlapEnd = end;
541 
542  assert((UNKNOWNS)*(overlapEnd-overlapStart)==aggregatesMap->noVertices());
543  for(int j=0; j< UNKNOWNS; ++j)
544  for(int i=0; i < UNKNOWNS; ++i)
545  {
546  if(i>=overlapStart && i<overlapEnd)
547  {
548  int no = (j/2)*((UNKNOWNS)/2)+i/2;
549  (*aggregatesMap)[j*(overlapEnd-overlapStart)+i-overlapStart]=no;
550  }
551  }
552  }
553 #endif
554  if(criterion.debugLevel()>1 && info->communicator().rank()==0)
555  std::cout<<"aggregating finished."<<std::endl;
556 
557  BIGINT gnoAggregates=noAggregates;
558  gnoAggregates = info->communicator().sum(gnoAggregates);
559  double dgnoAggregates = gnoAggregates.todouble();
560 #ifdef TEST_AGGLO
561  BIGINT gnoAggregates=((UNKNOWNS)/2)*((UNKNOWNS)/2);
562 #endif
563 
564  if(criterion.debugLevel()>2 && rank==0)
565  std::cout << "Building "<<dgnoAggregates<<" aggregates took "<<watch.elapsed()<<" seconds."<<std::endl;
566 
567  if(dgnoAggregates==0 || dunknowns/dgnoAggregates<criterion.minCoarsenRate())
568  {
569  if(rank==0)
570  {
571  if(dgnoAggregates>0)
572  std::cerr << "Stopped coarsening because of rate breakdown "<<dunknowns<<"/"<<dgnoAggregates
573  <<"="<<dunknowns/dgnoAggregates<<"<"
574  <<criterion.minCoarsenRate()<<std::endl;
575  else
576  std::cerr<< "Could not build any aggregates. Probably no connected nodes."<<std::endl;
577  }
578  aggregatesMap->free();
579  delete aggregatesMap;
580  aggregatesMaps_.pop_back();
581 
582  if(criterion.accumulate() && mlevel.isRedistributed() && info->communicator().size()>1) {
583  // coarse level matrix was already redistributed, but to more than 1 process
584  // Therefore need to delete the redistribution. Further down it will
585  // then be redistributed to 1 process
586  delete &(mlevel.getRedistributed().getmat());
587  mlevel.deleteRedistributed();
588  delete &(infoLevel.getRedistributed());
589  infoLevel.deleteRedistributed();
590  redistributes_.back().resetSetup();
591  }
592 
593  break;
594  }
595  unknowns = noAggregates;
596  dunknowns = dgnoAggregates;
597 
598  CommunicationArgs commargs(info->communicator(),info->category());
599  parallelInformation_.addCoarser(commargs);
600 
601  ++infoLevel; // parallel information on coarse level
602 
604  get(VertexVisitedTag(), *(std::get<1>(graphs)));
605 
606  watch.reset();
607  int aggregates = IndicesCoarsener<ParallelInformation,OverlapFlags>
608  ::coarsen(*info,
609  *(std::get<1>(graphs)),
610  visitedMap,
611  *aggregatesMap,
612  *infoLevel,
613  noAggregates);
614  GraphCreator::free(graphs);
615 
616  if(criterion.debugLevel()>2) {
617  if(rank==0)
618  std::cout<<"Coarsening of index sets took "<<watch.elapsed()<<" seconds."<<std::endl;
619  }
620 
621  watch.reset();
622 
623  infoLevel->buildGlobalLookup(aggregates);
624  AggregatesPublisher<Vertex,OverlapFlags,ParallelInformation>::publish(*aggregatesMap,
625  *info,
626  infoLevel->globalLookup());
627 
628 
629  if(criterion.debugLevel()>2) {
630  if(rank==0)
631  std::cout<<"Communicating global aggregate numbers took "<<watch.elapsed()<<" seconds."<<std::endl;
632  }
633 
634  watch.reset();
635  std::vector<bool>& visited=excluded;
636 
637  typedef std::vector<bool>::iterator Iterator;
638  typedef IteratorPropertyMap<Iterator, IdentityMap> VisitedMap2;
639  Iterator end = visited.end();
640  for(Iterator iter= visited.begin(); iter != end; ++iter)
641  *iter=false;
642 
643  VisitedMap2 visitedMap2(visited.begin(), Dune::IdentityMap());
644 
645  std::shared_ptr<typename MatrixOperator::matrix_type>
646  coarseMatrix(productBuilder.build(*(std::get<0>(graphs)), visitedMap2,
647  *info,
648  *aggregatesMap,
649  aggregates,
650  OverlapFlags()));
651  dverb<<"Building of sparsity pattern took "<<watch.elapsed()<<std::endl;
652  watch.reset();
653  info->freeGlobalLookup();
654 
655  delete std::get<0>(graphs);
656  productBuilder.calculate(matrix->getmat(), *aggregatesMap, *coarseMatrix, *infoLevel, OverlapFlags());
657 
658  if(criterion.debugLevel()>2) {
659  if(rank==0)
660  std::cout<<"Calculation entries of Galerkin product took "<<watch.elapsed()<<" seconds."<<std::endl;
661  }
662 
663  BIGINT nonzeros = countNonZeros(*coarseMatrix);
664  allnonzeros = allnonzeros + infoLevel->communicator().sum(nonzeros);
665  MatrixArgs args(coarseMatrix, *infoLevel);
666 
667  matrices_.addCoarser(args);
668  redistributes_.push_back(RedistributeInfoType());
669  } // end level loop
670 
671 
672  infoLevel->freeGlobalLookup();
673 
674  built_=true;
675  AggregatesMap* aggregatesMap=new AggregatesMap(0);
676  aggregatesMaps_.push_back(aggregatesMap);
677 
678  if(criterion.debugLevel()>0) {
679  if(level==criterion.maxLevel()) {
680  BIGINT unknownsLevel = mlevel->getmat().N();
681  unknownsLevel = infoLevel->communicator().sum(unknownsLevel);
682  double dunknownsLevel = unknownsLevel.todouble();
683  if(rank==0 && criterion.debugLevel()>1) {
684  std::cout<<"Level "<<level<<" has "<<dunknownsLevel<<" unknowns, "<<dunknownsLevel/infoLevel->communicator().size()
685  <<" unknowns per proc (procs="<<infoLevel->communicator().size()<<")"<<std::endl;
686  }
687  }
688  }
689 
690  if(criterion.accumulate() && !redistributes_.back().isSetup() &&
691  infoLevel->communicator().size()>1) {
692 #if HAVE_MPI && !HAVE_PARMETIS
693  if(criterion.accumulate()==successiveAccu &&
694  infoLevel->communicator().rank()==0)
695  std::cerr<<"Successive accumulation of data on coarse levels only works with ParMETIS installed."
696  <<" Fell back to accumulation to one domain on coarsest level"<<std::endl;
697 #endif
698 
699  // accumulate to fewer processors
700  std::shared_ptr<Matrix> redistMat = std::make_shared<Matrix>();
701  std::shared_ptr<ParallelInformation> redistComm;
702  int nodomains = 1;
703 
704  repartitionAndDistributeMatrix(mlevel->getmat(), redistMat, *infoLevel,
705  redistComm, redistributes_.back(), nodomains,criterion);
706  MatrixArgs args(redistMat, *redistComm);
707  BIGINT unknownsRedist = redistMat->N();
708  unknownsRedist = infoLevel->communicator().sum(unknownsRedist);
709 
710  if(redistComm->communicator().rank()==0 && criterion.debugLevel()>1) {
711  double dunknownsRedist = unknownsRedist.todouble();
712  std::cout<<"Level "<<level<<" redistributed has "<<dunknownsRedist<<" unknowns, "<<dunknownsRedist/redistComm->communicator().size()
713  <<" unknowns per proc (procs="<<redistComm->communicator().size()<<")"<<std::endl;
714  }
715  mlevel.addRedistributed(ConstructionTraits<MatrixOperator>::construct(args));
716  infoLevel.addRedistributed(redistComm);
717  infoLevel->freeGlobalLookup();
718  }
719 
720  int levels = matrices_.levels();
721  maxlevels_ = parallelInformation_.finest()->communicator().max(levels);
722  assert(matrices_.levels()==redistributes_.size());
723  if(hasCoarsest() && rank==0 && criterion.debugLevel()>1)
724  std::cout<<"operator complexity: "<<allnonzeros.todouble()/finenonzeros.todouble()<<std::endl;
725 
726  }
727 
728  template<class M, class IS, class A>
731  {
732  return matrices_;
733  }
734 
735  template<class M, class IS, class A>
738  {
739  return parallelInformation_;
740  }
741 
742  template<class M, class IS, class A>
743  void MatrixHierarchy<M,IS,A>::getCoarsestAggregatesOnFinest(std::vector<std::size_t>& data) const
744  {
745  int levels=aggregatesMaps().size();
746  int maxlevels=parallelInformation_.finest()->communicator().max(levels);
747  std::size_t size=(*(aggregatesMaps().begin()))->noVertices();
748  // We need an auxiliary vector for the consecutive prolongation.
749  std::vector<std::size_t> tmp;
750  std::vector<std::size_t> *coarse, *fine;
751 
752  // make sure the allocated space suffices.
753  tmp.reserve(size);
754  data.reserve(size);
755 
756  // Correctly assign coarse and fine for the first prolongation such that
757  // we end up in data in the end.
758  if(levels%2==0) {
759  coarse=&tmp;
760  fine=&data;
761  }else{
762  coarse=&data;
763  fine=&tmp;
764  }
765 
766  // Number the unknowns on the coarsest level consecutively for each process.
767  if(levels==maxlevels) {
768  const AggregatesMap& map = *(*(++aggregatesMaps().rbegin()));
769  std::size_t m=0;
770 
771  for(typename AggregatesMap::const_iterator iter = map.begin(); iter != map.end(); ++iter)
772  if(*iter< AggregatesMap::ISOLATED)
773  m=std::max(*iter,m);
774 
775  coarse->resize(m+1);
776  std::size_t i=0;
777  srand((unsigned)std::clock());
778  std::set<size_t> used;
779  for(typename std::vector<std::size_t>::iterator iter=coarse->begin(); iter != coarse->end();
780  ++iter, ++i)
781  {
782  std::pair<std::set<std::size_t>::iterator,bool> ibpair
783  = used.insert(static_cast<std::size_t>((((double)rand())/(RAND_MAX+1.0)))*coarse->size());
784 
785  while(!ibpair.second)
786  ibpair = used.insert(static_cast<std::size_t>((((double)rand())/(RAND_MAX+1.0))*coarse->size()));
787  *iter=*(ibpair.first);
788  }
789  }
790 
791  typename ParallelInformationHierarchy::Iterator pinfo = parallelInformation().coarsest();
792  --pinfo;
793 
794  // Now consecutively project the numbers to the finest level.
795  for(typename AggregatesMapList::const_reverse_iterator aggregates=++aggregatesMaps().rbegin();
796  aggregates != aggregatesMaps().rend(); ++aggregates,--levels) {
797 
798  fine->resize((*aggregates)->noVertices());
799  fine->assign(fine->size(), 0);
800  Transfer<typename AggregatesMap::AggregateDescriptor, std::vector<std::size_t>, ParallelInformation>
801  ::prolongateVector(*(*aggregates), *coarse, *fine, static_cast<std::size_t>(1), *pinfo);
802  --pinfo;
803  std::swap(coarse, fine);
804  }
805 
806  // Assertion to check that we really projected to data on the last step.
807  assert(coarse==&data);
808  }
809 
810  template<class M, class IS, class A>
813  {
814  return aggregatesMaps_;
815  }
816  template<class M, class IS, class A>
819  {
820  return redistributes_;
821  }
822 
823  template<class M, class IS, class A>
825  {
826  typedef typename AggregatesMapList::reverse_iterator AggregatesMapIterator;
827  typedef typename ParallelMatrixHierarchy::Iterator Iterator;
828  typedef typename ParallelInformationHierarchy::Iterator InfoIterator;
829 
830  AggregatesMapIterator amap = aggregatesMaps_.rbegin();
831  InfoIterator info = parallelInformation_.coarsest();
832  for(Iterator level=matrices_.coarsest(), finest=matrices_.finest(); level != finest; --level, --info, ++amap) {
833  (*amap)->free();
834  delete *amap;
835  }
836  delete *amap;
837  }
838 
839  template<class M, class IS, class A>
840  template<class V, class BA, class TA>
842  {
843  assert(hierarchy.levels()==1);
844  typedef typename ParallelMatrixHierarchy::ConstIterator Iterator;
845  typedef typename RedistributeInfoList::const_iterator RIter;
846  RIter redist = redistributes_.begin();
847 
848  Iterator matrix = matrices_.finest(), coarsest = matrices_.coarsest();
849  int level=0;
850  if(redist->isSetup())
851  hierarchy.addRedistributedOnCoarsest(matrix.getRedistributed().getmat().N());
852  Dune::dvverb<<"Level "<<level<<" has "<<matrices_.finest()->getmat().N()<<" unknowns!"<<std::endl;
853 
854  while(matrix != coarsest) {
855  ++matrix; ++level; ++redist;
856  Dune::dvverb<<"Level "<<level<<" has "<<matrix->getmat().N()<<" unknowns!"<<std::endl;
857 
858  hierarchy.addCoarser(matrix->getmat().N());
859  if(redist->isSetup())
860  hierarchy.addRedistributedOnCoarsest(matrix.getRedistributed().getmat().N());
861 
862  }
863 
864  }
865 
866  template<class M, class IS, class A>
867  template<class S, class TA>
869  const typename SmootherTraits<S>::Arguments& sargs) const
870  {
871  assert(smoothers.levels()==0);
872  typedef typename ParallelMatrixHierarchy::ConstIterator MatrixIterator;
873  typedef typename ParallelInformationHierarchy::ConstIterator PinfoIterator;
874  typedef typename AggregatesMapList::const_iterator AggregatesIterator;
875 
876  typename ConstructionTraits<S>::Arguments cargs;
877  cargs.setArgs(sargs);
878  PinfoIterator pinfo = parallelInformation_.finest();
879  AggregatesIterator aggregates = aggregatesMaps_.begin();
880  int level=0;
881  for(MatrixIterator matrix = matrices_.finest(), coarsest = matrices_.coarsest();
882  matrix != coarsest; ++matrix, ++pinfo, ++aggregates, ++level) {
883  cargs.setMatrix(matrix->getmat(), **aggregates);
884  cargs.setComm(*pinfo);
885  smoothers.addCoarser(cargs);
886  }
887  if(maxlevels()>levels()) {
888  // This is not the globally coarsest level and therefore smoothing is needed
889  cargs.setMatrix(matrices_.coarsest()->getmat(), **aggregates);
890  cargs.setComm(*pinfo);
891  smoothers.addCoarser(cargs);
892  ++level;
893  }
894  }
895 
896  template<class M, class IS, class A>
897  template<class F>
899  {
900  typedef typename AggregatesMapList::iterator AggregatesMapIterator;
901  typedef typename ParallelMatrixHierarchy::Iterator Iterator;
902  typedef typename ParallelInformationHierarchy::Iterator InfoIterator;
903 
904  AggregatesMapIterator amap = aggregatesMaps_.begin();
905  BaseGalerkinProduct productBuilder;
906  InfoIterator info = parallelInformation_.finest();
907  typename RedistributeInfoList::iterator riIter = redistributes_.begin();
908  Iterator level = matrices_.finest(), coarsest=matrices_.coarsest();
909  if(level.isRedistributed()) {
910  info->buildGlobalLookup(level->getmat().N());
911  redistributeMatrixEntries(const_cast<Matrix&>(level->getmat()),
912  const_cast<Matrix&>(level.getRedistributed().getmat()),
913  *info,info.getRedistributed(), *riIter);
914  info->freeGlobalLookup();
915  }
916 
917  for(; level!=coarsest; ++amap) {
918  const Matrix& fine = (level.isRedistributed() ? level.getRedistributed() : *level).getmat();
919  ++level;
920  ++info;
921  ++riIter;
922  productBuilder.calculate(fine, *(*amap), const_cast<Matrix&>(level->getmat()), *info, copyFlags);
923  if(level.isRedistributed()) {
924  info->buildGlobalLookup(level->getmat().N());
925  redistributeMatrixEntries(const_cast<Matrix&>(level->getmat()),
926  const_cast<Matrix&>(level.getRedistributed().getmat()), *info,
927  info.getRedistributed(), *riIter);
928  info->freeGlobalLookup();
929  }
930  }
931  }
932 
933  template<class M, class IS, class A>
935  {
936  return matrices_.levels();
937  }
938 
939  template<class M, class IS, class A>
941  {
942  return maxlevels_;
943  }
944 
945  template<class M, class IS, class A>
947  {
948  return levels()==maxlevels() &&
949  (!matrices_.coarsest().isRedistributed() ||matrices_.coarsest()->getmat().N()>0);
950  }
951 
952  template<class M, class IS, class A>
954  {
955  return built_;
956  }
957 
959  } // namespace Amg
960 } // namespace Dune
961 
962 #endif // end DUNE_AMG_MATRIXHIERARCHY_HH
Provides classes for the Coloring process of AMG.
This file implements a vector space as a tensor product of a given vector space. The number of compon...
Class providing information about the mapping of the vertices onto aggregates.
Definition: aggregates.hh:560
Base class of all aggregation criterions.
Definition: aggregates.hh:49
The criterion describing the stop criteria for the coarsening process.
Definition: matrixhierarchy.hh:283
T AggregationCriterion
The criterion for tagging connections as strong and nodes as isolated. This might be e....
Definition: matrixhierarchy.hh:289
CoarsenCriterion(int maxLevel=100, int coarsenTarget=1000, double minCoarsenRate=1.2, double prolongDamp=1.6, AccumulationMode accumulate=successiveAccu)
Constructor.
Definition: matrixhierarchy.hh:301
LevelIterator< Hierarchy< MatrixOperator, Allocator >, MatrixOperator > Iterator
Type of the mutable iterator.
Definition: hierarchy.hh:216
LevelIterator< const Hierarchy< MatrixOperator, Allocator >, const MatrixOperator > ConstIterator
Type of the const iterator.
Definition: hierarchy.hh:219
The hierarchies build by the coarsening process.
Definition: matrixhierarchy.hh:61
typename std::allocator_traits< Allocator >::template rebind_alloc< AggregatesMap * > AAllocator
Allocator for pointers.
Definition: matrixhierarchy.hh:85
Dune::Amg::Hierarchy< ParallelInformation, Allocator > ParallelInformationHierarchy
The type of the parallel informarion hierarchy.
Definition: matrixhierarchy.hh:82
std::list< AggregatesMap *, AAllocator > AggregatesMapList
The type of the aggregates maps list.
Definition: matrixhierarchy.hh:88
PI ParallelInformation
The type of the index set.
Definition: matrixhierarchy.hh:70
Dune::Amg::Hierarchy< MatrixOperator, Allocator > ParallelMatrixHierarchy
The type of the parallel matrix hierarchy.
Definition: matrixhierarchy.hh:79
A Allocator
The allocator to use.
Definition: matrixhierarchy.hh:73
RedistributeInformation< ParallelInformation > RedistributeInfoType
The type of the redistribute information.
Definition: matrixhierarchy.hh:91
typename std::allocator_traits< Allocator >::template rebind_alloc< RedistributeInfoType > RILAllocator
Allocator for RedistributeInfoType.
Definition: matrixhierarchy.hh:94
std::list< RedistributeInfoType, RILAllocator > RedistributeInfoList
The type of the list of redistribute information.
Definition: matrixhierarchy.hh:97
Dune::Amg::AggregatesMap< typename MatrixGraph< Matrix >::VertexDescriptor > AggregatesMap
The type of the aggregates map we use.
Definition: matrixhierarchy.hh:76
MatrixOperator::matrix_type Matrix
The type of the matrix.
Definition: matrixhierarchy.hh:67
M MatrixOperator
The type of the matrix operator.
Definition: matrixhierarchy.hh:64
All parameters for AMG.
Definition: parameters.hh:393
Attaches properties to the edges and vertices of a graph.
Definition: graph.hh:978
Graph::VertexDescriptor VertexDescriptor
The vertex descriptor.
Definition: graph.hh:988
A vector of blocks with memory management.
Definition: bvector.hh:395
derive error class from the base class in common
Definition: istlexception.hh:19
Adapter to turn a random access iterator into a property map.
Definition: propertymap.hh:108
A generic dynamic dense matrix.
Definition: matrix.hh:561
A::size_type size_type
Type for indices and sizes.
Definition: matrix.hh:577
MatrixImp::DenseMatrixBase< T, A >::window_type row_type
The type implementing a matrix row.
Definition: matrix.hh:574
A simple stop watch.
Definition: timer.hh:43
void reset() noexcept
Reset timer while keeping the running/stopped state.
Definition: timer.hh:57
double elapsed() const noexcept
Get elapsed user-time from last reset until now/last stop in seconds.
Definition: timer.hh:77
Portable very large unsigned integers.
Definition: bigunsignedint.hh:73
Helper classes for the construction of classes without empty constructor.
Provides classes for initializing the link attributes of a matrix graph.
Provides a map between global and local indices.
Provides a class for building the galerkin product based on a aggregation scheme.
Provdes class for identifying aggregates globally.
Provides classes for building the matrix graph.
#define DUNE_THROW(E, m)
Definition: exceptions.hh:218
constexpr T accumulate(Range &&range, T value, F &&f)
Accumulate values.
Definition: hybridutilities.hh:291
const AggregatesMapList & aggregatesMaps() const
Get the hierarchy of the mappings of the nodes onto aggregates.
Definition: matrixhierarchy.hh:812
bool isBuilt() const
Whether the hierarchy was built.
Definition: matrixhierarchy.hh:953
std::size_t levels() const
Get the number of levels in the hierarchy.
Definition: hierarchy.hh:322
std::size_t levels() const
Get the number of levels in the hierarchy.
Definition: matrixhierarchy.hh:934
void addCoarser(Arguments &args)
Add an element on a coarser level.
Definition: hierarchy.hh:334
const RedistributeInfoList & redistributeInformation() const
Get the hierarchy of the information about redistributions,.
Definition: matrixhierarchy.hh:818
const ParallelInformationHierarchy & parallelInformation() const
Get the hierarchy of the parallel data distribution information.
Definition: matrixhierarchy.hh:737
const ParallelMatrixHierarchy & matrices() const
Get the matrix hierarchy.
Definition: matrixhierarchy.hh:730
std::size_t maxlevels() const
Get the max number of levels in the hierarchy of processors.
Definition: matrixhierarchy.hh:940
static const V ISOLATED
Identifier of isolated vertices.
Definition: aggregates.hh:571
void recalculateGalerkin(const F &copyFlags)
Recalculate the galerkin products.
Definition: matrixhierarchy.hh:898
const void * Arguments
A type holding all the arguments needed to call the constructor.
Definition: construction.hh:44
std::size_t noVertices() const
Get the number of vertices.
std::tuple< int, int, int, int > buildAggregates(const M &matrix, G &graph, const C &criterion, bool finestLevel)
Build the aggregates.
void coarsenVector(Hierarchy< BlockVector< V, BA >, TA > &hierarchy) const
Coarsen the vector hierarchy according to the matrix hierarchy.
Definition: matrixhierarchy.hh:841
MatrixHierarchy(std::shared_ptr< MatrixOperator > fineMatrix, std::shared_ptr< ParallelInformation > pinfo=std::make_shared< ParallelInformation >())
Constructor.
Definition: matrixhierarchy.hh:389
AccumulationMode
Identifiers for the different accumulation modes.
Definition: parameters.hh:232
void build(const T &criterion)
Build the matrix hierarchy using aggregation.
Definition: matrixhierarchy.hh:400
void free()
Free the allocated memory.
void coarsenSmoother(Hierarchy< S, TA > &smoothers, const typename SmootherTraits< S >::Arguments &args) const
Coarsen the smoother hierarchy according to the matrix hierarchy.
Definition: matrixhierarchy.hh:868
void buildDependency(G &graph, const typename C::Matrix &matrix, C criterion, bool finestLevel)
Build the dependency of the matrix graph.
void getCoarsestAggregatesOnFinest(std::vector< std::size_t > &data) const
Get the mapping of fine level unknowns to coarse level aggregates.
Definition: matrixhierarchy.hh:743
@ MAX_PROCESSES
Hard limit for the number of processes allowed.
Definition: matrixhierarchy.hh:50
@ atOnceAccu
Accumulate data to one process at once.
Definition: parameters.hh:244
@ successiveAccu
Successively accumulate to fewer processes.
Definition: parameters.hh:248
auto countNonZeros(const M &, [[maybe_unused]] typename std::enable_if_t< Dune::IsNumber< M >::value > *sfinae=nullptr)
Get the number of nonzero fields in the matrix.
Definition: matrixutils.hh:119
auto min(ADLTag< 0 >, const V &v1, const V &v2)
implements binary Simd::min()
Definition: defaults.hh:89
auto max(ADLTag< 0 >, const V &v1, const V &v2)
implements binary Simd::max()
Definition: defaults.hh:81
DVVerbType dvverb(std::cout)
stream for very verbose output.
Definition: stdstreams.hh:95
DInfoType dinfo(std::cout)
Stream for informative output.
Definition: stdstreams.hh:140
DVerbType dverb(std::cout)
Singleton of verbose debug stream.
Definition: stdstreams.hh:116
Provides a classes representing the hierarchies in AMG.
Provides a class for building the index set and remote indices on the coarse level.
Functionality for redistributing a sparse matrix.
Some handy generic functions for ISTL matrices.
Dune namespace.
Definition: alignedallocator.hh:13
bool graphRepartition(const G &graph, Dune::OwnerOverlapCopyCommunication< T1, T2 > &oocomm, Metis::idx_t nparts, std::shared_ptr< Dune::OwnerOverlapCopyCommunication< T1, T2 >> &outcomm, RedistributeInterface &redistInf, bool verbose=false)
execute a graph repartition for a giving graph and indexset.
Definition: repartition.hh:1235
void redistributeMatrix(M &origMatrix, M &newMatrix, C &origComm, C &newComm, RedistributeInformation< C > &ri)
Redistribute a matrix according to given domain decompositions.
Definition: matrixredistribute.hh:820
Classes for the generic construction and application of the smoothers.
Traits class for generically constructing non default constructable types.
Definition: construction.hh:39
Traits class for getting the attribute class of a smoother.
Definition: smoother.hh:66
Tag idnetifying the visited property of a vertex.
Definition: properties.hh:29
A property map that applies the identity function to integers.
Definition: propertymap.hh:293
Selector for the property map type.
Definition: propertymap.hh:320
static Category category(const OP &op, decltype(op.category()) *=nullptr)
Helperfunction to extract the solver category either from an enum, or from the newly introduced virtu...
Definition: solvercategory.hh:34
Prolongation and restriction for amg.
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